Journal Publications

Improving metagenomic binning results with overlapped bins using assembly graphs
May 2021
BMC Algorithms for Molecular Biology
Authors: Vijini Mallawaarachchi, Anuradha Wickramarachchi, Yu Lin
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GraphBin: Refined binning of metagenomic contigs using assembly graphs
March 2020
Bioinformatics
Authors: Vijini Mallawaarachchi, Anuradha Wickramarachchi, Yu Lin
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Change Detection and Notification of Web Pages: A Survey
February 2020
ACM Computing Surveys (CSUR) Vol. 53 No. 1 Article No. 15
Authors: Vijini Mallawaarachchi, Lakmal Meegahapola, Roshan Madhushanka, Eranga Heshan, Dulani Meedeniya, Sampath Jayarathna
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Experiential Learning in Bioinformatics – Learner Support for Complex Workflow Modelling and Analysis
December 2018
International Journal of Emerging Technologies in Learning (iJET) 13(12):19-34
Authors: Vijini Mallawaarachchi, Anuradha Wickramarachchi, Anuradha Welivita, Indika Perera, Dulani Meedeniya
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Managing Complex Workflows in Bioinformatics – An Interactive Toolkit with GPU Acceleration
May 2018
IEEE Transactions on NanoBioscience
Authors: Anuradha Welivita, Indika Perera, Dulani Meedeniya, Anuradha Wickramarachchi, Vijini Mallawaarachchi
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Conference Publications

GraphBin2: Refined and overlapped binning of metagenomic contigs using assembly graphs
September 2020
20th International Workshop on Algorithms in Bioinformatics (WABI 2020), Pisa, Italy (Virtual Conference)
Authors: Vijini Mallawaarachchi, Anuradha Wickramarachchi, Yu Lin
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MetaBCC-LR: Metagenomics Binning by Coverage and Composition for Long Reads
July 2020
28th Conference on Intelligent Systems for Molecular Biology ISMB’20 (Virtual Conference)
Authors: Anuradha Wickramarachchi, Vijini Mallawaarachchi, Yu Lin
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Enhanced Student Learning in Proteomics – An Interactive Tool Support for Teaching Workflows
December 2018
IEEE International Conference on Teaching, Assessment and Learning for Engineering (TALE) 2018, Wollongong, Australia
Authors: Anuradha Wickramarachchi, Vijini Mallawaarachchi, Anuradha Welivita, Indika Perera, Dulani Meedeniya
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Efficient Scheduling for Scalable Bioinformatics Analysis Platform with Microservices
September 2018
18th IEEE International Conference of Advances in ICT for Emerging Regions (ICTer) 2018, Colombo, Sri Lanka
Authors: Sanduni Prasadi, Vijini Mallawaarachchi, Anuradha Wickramarachchi, Indika Perera, Dulani Meedeniya
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Efficient Bioinformatics Computations through GPU Accelerated Web Services
July 2018
2018 2nd International Conference on Algorithms, Computing and Systems, Beijing, China
Authors: Vijini Mallawaarachchi, Anuradha Wickramarachchi, Anuradha Welivita, Indika Perera, Dulani Meedeniya
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Random Forest Classifier based Scheduler Optimization for Search Engine Web Crawlers
February 2018
7th International Conference on Software and Computer Applications (ICSCA) 2018, Kuantan, Malaysia
Authors: Lakmal Meegahapola, Vijini Mallawaarachchi, Roshan Alwis, Eranga Nimalarathna, Dulani Meedeniya, Sampath Jayarathna
Awards: Won the excellent oral presentation certificate of the Computer Science and Information Communication session
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Adaptive Technique for Web Page Change Detection using Multi-threaded Crawlers
August 2017
7th IEEE International Conference on Innovative Computing Technology (INTECH) 2017, London, United Kingdom
Authors: Lakmal Meegahapola, Roshan Alwis, Eranga Nimalarathna, Vijini Mallawaarachchi, Dulani Meedeniya, Sampath Jayarathna
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