GraphBin is the first automated tool to make use of assembly graphs to refine binning results from existing metagenomic binning tools.

GraphBin2 is the next generation of GraphBin that refines binning results and assigns contigs to multiple bins if they are shared between different species.

MetaCoAG is the first stand-alone metagenomic binning tool that makes use of assembly graphs apart from composition and coverage information for binning.

ConDiGA (contigs directed gene annotation) is an accurate taxonomic annotation pipeline from metagenomic data to construct accurate protein sequence databases for deep metaproteomic coverage.

Phables can resolve high-quality bacteriophage genomes from fragmented assemblies of viral metagenomic data using graph algorithms and flow decomposition techniques.

Reneo is a software developed to unravel or untangle high-quality genomes from viral communities (including both prokaryotic and eukaryotic viruses) found within metagenomes using assembly graphs